Data Types#

Tissue Types#

HETissue(*, image, tissue_id[, channels, kind])

HETissue class to represent a H&E Tissue sample.

MultiplexTissue(*, image, tissue_id[, kind, ...])

MultiplexTissue class to represent a Multiplex Tissue sample.

IHCTissue(*, image, tissue_id[, channels, kind])

IHCTissue class to represent an IHC Tissue sample.

ComposedTissue(*, tissue_id, modalities)

ComposedTissue class to represent a tissue sample composed of multiple modalities.

Masks#

TissueMask(*, mask, tissue_id)

TissueMask class to represent a Tissue Mask sample.

CellMask(*, mask, tissue_id[, mapping])

Cell Segmentation/Instance Mask class to represent a Cell Segmentation/Instance Mask sample.